Molecular Biology Laboratory

The Environmental Engineering Molecular Biology Laboratory houses the instrumentation
neccessary to acquire DNA from environmental samples, conduct some DNA-based
analyses, and to prepare samples for further analyses in OSU's Central Services
Laboratory. The primary focus of our molecular work has been to identify
microorganisms in laboratory cultures and from environmental samples by
analysis of their ribosomal DNA genes (phylogeny). One project included
the identification of aerobic organisms able to cometabolically degrade
a variety of chlorinated solvents when fed hydrocarbons as a growth substrate.
We have isolated some of the solvent-degrading organisms and have bioaugmented
them to a test aquifer to determine if they would provide the needed function
of pollutant transformation and to see if we could track their transport
through the subsurface. We are currently using real-time PCR techniques
to enumerate the bioaugmented bacteria in environmental samples taken throughout
the aquifer test zone.
We have also been able to apply molecular bioogical tools to determine whether
specific anaerobic dechlorinating bacteria are present in our mixed anaerobic
cultures that have been actively degrading chlorinated solvents.
Plans for the future include using reverse transcritase PCR for the detection
of specific gene expression in various microbial systems and the use of DNA
microarrays to evaluate complete genome expression under various environmental
stresses.
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